Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015905461.1_cds_XP_016455700.1_49610
CDS Infomation

[gene=LOC107779733] [db_xref=GeneID:107779733] [protein=nijmegen breakage syndrome 1 protein-like] [protein_id=XP_016455700.1] [location=complement(join(57800..57853,57936..58038,58126..58187,58688..59169,60091..60259,61379..61447,61773..61881,61981..62027,63562..63692,64336..64421,64528..64792,66343..66396,67600..67636))] [gbkey=CDS]
Sequence

ATGGTTTGGGGCCTTTTCCCTGTTGACCCACTTCCAGGTGAAGATAAGTACTATTTCTTC
AATAAAGGAACATATAAAGTGGGTCGAAAAGGATGTGATGTCATTGTCAACAAGGATAAA
GGAGTTTCAAGGATCCATGCAGAAATTATAATAGATGAAATGAGTTCTTTGGATCAGTCA
TTGAAGAAACCCTCAGATATTTCATCTAAAGTACGTATAAGAGACTGCTCAAAGTATGGA
ACATTCCTCAACAAGAATCTGGGCTCGAAGGAGAAAGTTCATGAGTTTCCAAATAGAGAA
ACAATGCTTAAGGATGGGGATCTAGTTTCATTTGGAACTGGTAATGCAACTTACAGATTC
TCTTATGTGCCCTTCATATTTTTCATTTGCTCCGCGAAGCATTCGAAGACAAAACAACTT
ACTACAAAGGTGTCATCAATAGGCGCCAGTATAACGAAAAAGTGGAGTTTGGACTGCTCA
CATGTGCTTGTAGATGACTCCTTTCCACTGAGTGAAGATCTGGTTGATGCTATTGCTGCT
AGAAAACCCTTGGTTCAATATAGTTGGGTTGAGCTAATTGCAGGAAAAAATATTTGCACT
GATATTCCAAGCTGCACATCTCATGCACCAAACTTGATGCTGGAAGGAGTGTCAGTCAAA
GTGGTAGATCCTCAGTCTCGAGAGTGTTGTTTGAAAGGATATACGTTTTTGCTGGAACCA
GAAGCTAAGTATAAATTTGAGGGCAGGTTGCAGTCCTTGTTGGAAATTGGGGGTGCCAAT
GTTTCTTCTGCAAACATGGTCTTGGAGAAAAATGGAGATGACCGTGTGGTGTGTGTAGTT
CCTGCAAGATCAAGCAGCTCTAAGTGTTTTACTAACCATAGTTCTTTGCCTTGGGTGAGT
GAGATAGATCTGGTTTCTGCAGTTCTATCTGGATATCTGGATCCTTCTCTAATCATAACT
CCACCAGTGCACATTACATCTTCATGCTCCACGGTTGAGACAGTAGTTGCAGATTCAGAT
GCAGAAACAGAAAGTATGAAATCAGATCACATTGCTGCTGCTGTCTGTTCAATAGAAGCT
CCAGAGTATGACAGCAAGGCAACAACTTCTGCACACAAACTAGAATCTGTTGAAAATTAT
AATGAAGATAAGTGTTCTGTCCAAATAGTTATACCTGGGGATAAGGGATCCAAGAGGGAC
ACATCTCCCAGTTCAACAAAACCTGTTAAACATGATGATGCTACCACTCATGACCCTGAA
AGTGGTTACATCGGGCGCTTAGGAGTCAAATCTGATAATACAGTGGCAAAAAAAGATATA
ACTGATGAGCCGGAAAATGGGAAGTTGGACATCATATATAGCCAAGATTTAATTGTTAGA
GATTCTATCATGTCGTTACCAGTCTCTTCAACAAATGGCGGAGTTACAAATTTTAAGCGC
TTCCGTAAGACAAGTGCTCCATCCCCGAATAGCTTTGAAATCTTCATTCCGTTCGCCAAG
TATCCATATCAAGAATCTGAGTATAAGAATGAAGATGTTGCTGAATCGATTAAAGAAGAG
AAAAAGAGAAAACAAATGGAAGCTATTGCCGAGGACCTGTTTAACAGTGAAAAGGGAAGA
CGACGTGGTGCAGCTGGTTCCCTGCATGGTTTGTTTGCTCGTAAATAA

Peptide Sequence

PEP ID

XP_016455700.1
PEP Infomation

PREDICTED: nijmegen breakage syndrome 1 protein-like [Nicotiana tabacum]
Sequence

MVWGLFPVDPLPGEDKYYFFNKGTYKVGRKGCDVIVNKDKGVSRIHAEIIIDEMSSLDQS
LKKPSDISSKVRIRDCSKYGTFLNKNLGSKEKVHEFPNRETMLKDGDLVSFGTGNATYRF
SYVPFIFFICSAKHSKTKQLTTKVSSIGASITKKWSLDCSHVLVDDSFPLSEDLVDAIAA
RKPLVQYSWVELIAGKNICTDIPSCTSHAPNLMLEGVSVKVVDPQSRECCLKGYTFLLEP
EAKYKFEGRLQSLLEIGGANVSSANMVLEKNGDDRVVCVVPARSSSSKCFTNHSSLPWVS
EIDLVSAVLSGYLDPSLIITPPVHITSSCSTVETVVADSDAETESMKSDHIAAAVCSIEA
PEYDSKATTSAHKLESVENYNEDKCSVQIVIPGDKGSKRDTSPSSTKPVKHDDATTHDPE
SGYIGRLGVKSDNTVAKKDITDEPENGKLDIIYSQDLIVRDSIMSLPVSSTNGGVTNFKR
FRKTSAPSPNSFEIFIPFAKYPYQESEYKNEDVAESIKEEKKRKQMEAIAEDLFNSEKGR
RRGAAGSLHGLFARK

Transcript Sequence

Gene sequence data has not been registered.